Package: SNPassoc
Version: 2.3.1
Date: 2026-04-13
Depends: R (>= 4.0.0)
Imports: mvtnorm, parallel, survival, tidyr, plyr, ggplot2, poisbinom,
        rms, methods
Suggests: testthat, knitr, rmarkdown, biomaRt, VariantAnnotation,
        GenomicRanges, IRanges, S4Vectors, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Title: SNPs-Based Whole Genome Association Studies
Authors@R: c( person(given = "Victor", family = "Moreno", role = "aut"),
              person(given = "Juan R", family = "Gonzalez", 
              email = "juanr.gonzalez@isglobal.org", role = c("aut"),
              comment = c(ORCID = "0000-0003-3267-2146")),
              person(given = "Dolors", family = "Pelegri", 
              email = "dolors.pelegri@isglobal.org", role = c("aut", "cre"),
              comment = c(ORCID = "0000-0002-5993-3003")))
Description: Functions to perform most of the common analysis in genome
        association studies are implemented. These analyses include
        descriptive statistics and exploratory analysis of missing
        values, calculation of Hardy-Weinberg equilibrium, analysis of
        association based on generalized linear models (either for
        quantitative or binary traits), and analysis of multiple SNPs
        (haplotype and epistasis analysis). Permutation test and
        related tests (sum statistic and truncated product) are also
        implemented. Max-statistic and genetic risk-allele score exact
        distributions are also possible to be estimated. The methods
        are described in Gonzalez JR et al., 2007 <doi:
        10.1093/bioinformatics/btm025>. This version includes internal
        copies of functions from the archived 'haplo.stats' package to
        maintain functionality.
URL: https://github.com/isglobal-brge/SNPassoc
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.2.2
NeedsCompilation: yes
Config/pak/sysreqs: cmake libfftw3-dev make libicu-dev libuv1-dev
Repository: https://isglobal-brge.r-universe.dev
Date/Publication: 2026-04-13 08:38:45 UTC
RemoteUrl: https://github.com/isglobal-brge/snpassoc
RemoteRef: HEAD
RemoteSha: f447edc1186e415a19b9477751c2f08d201b7a15
Packaged: 2026-07-03 11:27:33 UTC; root
Author: Victor Moreno [aut],
  Juan R Gonzalez [aut] (ORCID: <https://orcid.org/0000-0003-3267-2146>),
  Dolors Pelegri [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5993-3003>)
Maintainer: Dolors Pelegri <dolors.pelegri@isglobal.org>